FileCart

BEAST2 2.7.8

Bayesian evolutionary analysis by sampling trees

filecart Mac Updated Oct 13, 2026
Download
9downloads
1this week
FreeLicense
0reviews

About BEAST2

Bayesian evolutionary analysis by sampling trees
Release info Update on Jun 17, 2025
Release notes This is a package release only -- to install, install v2.7.7 and update the BEAST.base and BEAST.app packages.

BEAST
o fix DeltaExchangeOperator, BactrianDeltaExchangeOperator, for weighted Dirichlet #1199
o For initialisation & weighing for Dirichlet #1190

o facilitate beast "-validate" option BeastFX#86
o fix for direct simulating from integer distribution #1186
o enhance beast "-validate" option. BeastFX#86
o make TreeWithMetaDataLogger produce correct nr of commas. #1177
o make BactrianOperatorSchedule ignore Uniform operators if parameter is not a RealParameter #1183
o update parameter dimension on -resume #1159
o deal with spaces in quoted attribute values BeastFX#30
o make Newick parser work for MemoryFriendlyTreeSet. BeastFX#85

BEAUti
o fix issue with link/unlink parittions in BEAUti. BeastFX#83
o fix renaming id's when cloning site model. BeastFX#91
o replace colons by dashes in IDs named by file name. #1184
o make alignments non-clonable for BEAUti link/unlink support #1150

TreeAnnotator
o Fixing BeastFX#92 GUI dropdown not closing on first selection

Other apps
o add -includeEvery option to LogCombiner BeastFX#84
o add -version_file option to AppLauncher #1158
o fix threading when running LogAnalyser with threads. BeastFX#81
o make Application validate Inputs after setting Input values. BeastFX#97
o set IDs of parsed trees in tree set BeastFX#87

For developers

o more robust state reconstruction in MCMC. #1201
o allow use of Coalescent without specifying TreeIntervals. #1192
o add public method to GeneralSubstitutionModel #1181

o add Description to TreeAnnotator, which shows when running treeannotator -help BeastFX#28
o add support for citing methods in TreeAnnotator BeastFX#94
o split off Citable from BEASTInterface so it can be used independently. Facilitates BeastFX#94
o Substitution model RealParamter input to Function input conversions #1196
o robustify tree likelihoods for possibility data is not Alignment #1174
o add benchmark interface to…
Listing dataHomebrew Cask

Reviews

No reviews yet. Be the first to review BEAST2.

Used BEAST2? Tell other visitors what you thought.

Log in to write a review

Other products by this publisher

Most viewed Mac Data & Analytics

  1. 1 AquaSKK 4.7.3 Input method without morphological analysis 113
  2. 2 Gephi 0.11.4 Open-source platform for visualizing and manipulating large graphs 71
  3. 3 JASP 0.99.0.0 Statistical analysis application 67
  4. 4 AquaSKK 4.7.9 Input method without morphological analysis 65
  5. 5 KeeperDB 3.0.0 Database management tool for Postgres, MySQL, SQLite, MSSQL, Oracle, Redshift 63
  6. 6 DB Pro 2.10.2 Query, explore, and manage your databases with built-in AI 62
  7. 7 Letos 4.0.4 Create, edit, browse SQLite databases 62
  8. 8 MagicPlot 3.2 Software for nonlinear fitting, plotting and data analysis 59
  9. 9 elemental 7.7.0 Native XML Database with XQuery and XSLT 57
  10. 10 GeoGebra 5.4.934.0 Solve, save and share math problems, graph functions, etc 56

Most downloaded Mac Data & Analytics

  1. 1 GeoGebra 5.4.934.0 Solve, save and share math problems, graph functions, etc 32
  2. 2 MagicPlot 3.2 Software for nonlinear fitting, plotting and data analysis 32
  3. 3 GraphPad Prism 11.1.0 Statistical analysis and graphing software 28
  4. 4 MEGA 12.1.4 Molecular evolution statistical analysis and construction of phylogenetic trees 28
  5. 5 Letos 4.0.4 Create, edit, browse SQLite databases 26
  6. 6 Navicat for SQLite 17.3.13 Database administration and development tool for SQLite 25
  7. 7 AquaSKK 4.7.9 Input method without morphological analysis 24
  8. 8 JASP 0.99.0.0 Statistical analysis application 24
  9. 9 Gephi 0.11.4 Open-source platform for visualizing and manipulating large graphs 23
  10. 10 Tabularis Nightly 0.30.1-6 Lightweight database management tool 23